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Compliance testing

In the repository under /test_api are compliance tests for a service implementing the sequence collections API. This will test your collection and comparison endpoints to make sure the comparison function is working.

  • pytest test_api to tests API compliance

  • pytest test_api --api_root http://127.0.0.1:8100 to customize the API root URL to test

  • Load the fasta files from the test_fasta folder into your API database.

  • Run pytest test_api --api_root <API_URL>, pointing to your URL to test

For example, this will test a remote server instance:

pytest test_api --api_root https://seqcolapi.databio.org