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Refgenie: next-generation reference genome management
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Refgenie
Refgenie server
Refgenie 1
Refgenie server 1
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Refgenie: next-generation reference genome management
refgenie/refgenie-docs
Home
Refgenie
Refgenie
Getting Started
Getting Started
Demo videos
Overview
Install and configure
Basic tutorial
Citing refgenie
How-to guides
How-to guides
Refer to assets
Download pre-built assets
Build assets
Add custom assets
Retrieve paths to assets
Use asset tags
Use aliases
Populate refgenie paths
Compare genomes
Run my own asset server
Use refgenie from Python
Use refgenie in your pipeline
Use refgenie on the cloud
Use refgenie with iGenomes
Upgrade from config 0.3 to 0.4
Reference
Reference
Studies using refgenie
Genome configuration file
Recipe
Asset class
Glossary
Buildable assets
Usage
Refgenconf usage
FAQ
Support
Contributing
Changelog
Refgenie server
Refgenie server
Refgenie 1
Refgenie 1
Getting Started
Getting Started
Overview
Install
Configure
Citing refgenie
How-to guides
How-to guides
Refer to assets
Download pre-built assets
Use refgenie from Python
Use data channels
Build assets
Download pre-built assets
Retrieve paths to assets
Managing asset groups and naming
Populate refgenie paths
Set up your own data channel
Reference
Reference
Glossary
Studies using refgenie
Recipe
Asset class
Refgenie server 1
Refgenie server 1
Preparing servable assets at scale
Data channels
Remotes
Persisting asset download stats
Pagination and search
Data Channels Configuration
Refget
Refget
Getting started
Getting started
What are refget digests?
What is RefgetStore?
Using refget services
Using refget services
Computing digests
Python SequenceClient
Python SequenceCollectionClient
RefgetStore (local storage)
Hosting refget services
Hosting refget services
Adding a FastAPI router
RefgetDB Agent
Compliance testing
Reference
Reference
CLI
CLI Configuration
REST API
Python API
Data models
RefgetStore format
Changelog
reference genome manager
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